EMDB >EMD-0103
Single Particle reconstruction
4.0Å
Source organism:
Coxsackievirus B3 (strain Nancy)
[103903]
Fitted atomic model:
3Dbionotes:
Primary publication:
A novel druggable interprotomer pocket in the capsid of rhino- and enteroviruses.
Abdelnabi R, Geraets JA, Ma Y, Mirabelli C, Flatt JW, Domanska A, Delang L, Jochmans D, Kumar TA, Jayaprakash V, Sinha BN, Leyssen P, Butcher SJ, Neyts J.
Plos Biol. (2019) 17 pp. e3000281-e3000281
[doi: 10.1371/journal.pbio.3000281 ]
Abdelnabi R, Geraets JA, Ma Y, Mirabelli C, Flatt JW, Domanska A, Delang L, Jochmans D, Kumar TA, Jayaprakash V, Sinha BN, Leyssen P, Butcher SJ, Neyts J.
Plos Biol. (2019) 17 pp. e3000281-e3000281
[doi: 10.1371/journal.pbio.3000281 ]
PMID:
Coxsackievirus B3 (strain Nancy)
[Coxsackievirus B3 (strain Nancy)]
Name:
Coxsackievirus B3 (strain Nancy)
Type:
VIRUS
Capsid protein VP1
Name:
Capsid protein VP1
Type:
PROTEIN
Theoretical weight (MDa):
0.032
Capsid protein VP2
Name:
Capsid protein VP2
Type:
PROTEIN
Theoretical weight (MDa):
0.029
Capsid protein VP3
Name:
Capsid protein VP3
Type:
PROTEIN
Theoretical weight (MDa):
0.026
Capsid protein VP4
Name:
Capsid protein VP4
Type:
PROTEIN
Theoretical weight (MDa):
0.008
4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid
Name:
4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid
Type:
LIGAND
Theoretical weight (MDa):
0.0
Sample information
Sample name:
Coxsackievirus B3 (strain Nancy)
Ligands:
4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid
Proteins:
Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, Capsid protein VP4
Validation information
Experimental information
Image processing
Number of particles:
4891
Fitting
Fitting protocol:
FLEXIBLE
Refinement space:
REAL
Imaging
Session
Microscope model:
FEI_TITAN_KRIOS
Electron source:
FIELD_EMISSION_GUN
Electron dose (e/A**2):
47.0
Holder model:
FEI_TITAN_KRIOS_AUTOGRID_HOLDER
Specimen
Preparation
Specimen state:
PARTICLE
Vitrification
Apparatus:
HOMEMADE_PLUNGER
Cryogen:
ETHANE